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e-Monocot is a NERC funded consortium between Royal Botanic Gardens Kew, Oxford University and the Natural History Museum.

 

Grant no's 279981, 279984 & 279970. Period, Nov./Dec. 2010 to Oct./Nov. 2013.

 

 

E-mail: enquiries@e-monocot.org.

Pyrolirion albicans (Amaryllidaceae) in arid habitat in coastal Peru. Photographer Oliver Whaley.

Welcome

eMonocot aims to create a global online resource for monocot plants. It will provide a focus for taxonomists working on monocots and will help people discover information about monocots by providing tools for identification, up-to-date checklists, descriptions and links to other resources.

 

 

eMonocot builds upon existing collaborations and projects within European Distributed Institute of Taxonomy (EDIT) such as Palmweb and Scratchpads, in addition to CATE (including CATE-Araceae) and GrassBase – The online world grass flora.

 

When complete, eMonocot will:

  1. Enable the identification of monocot plants anywhere in the world (monocots are 20% of all flowering plants)

  2. Provide a wealth of information about monocot species, genera and families

  3. Address separately the needs of different users, from professional taxonomists through ecologists and conservation biologists to gardeners and the interested public

  4. Link together monocot taxonomists to enhance their productivity, particularly those working in smaller institutions without access to large collections and libraries

  5. Provide a model for the web taxonomy of the rest of the plant kingdom and for animal groups

 

 

eMonocot Blog

Join Paul Wilkin and Anna Trias Blasi at the Natural History Museum on the 23rd January where they will be presenting a Nature live event on snowdrops. Discover how snowdrops survive throughout the year and how scientists are keeping track of snowdrop diversity in the virtual world.

Anna curates the CITES bulbs scratchpad - a dynamic e-taxonomic system to serve the biological and horticultural user community dealing with Cites bulbs. Here you can discover information about  the bulb genera Galanthus (snowdrops) and Sternbergia. Both belong to the family Amaryllidaceae in the monocotyledons.

The workshop call is now closed

All submissions will be assessed and the applicants will be contacted by January 16th 2012.

We would like to thank everyone who applied for an eTaxonomy Workshop Bursary.

If you have missed the workshop deadline there are still other ways that eMonocot could assist you in your e-taxonomy work. Therefore if you are interested in the eMonocot project and wish to learn more, please contact us at enquiries@e-monocot.org

Chasing Madagascar forest grasses: collecting expedition 5 October – 8 November 2011

Maria S. Vorontsova

Can grasses really live in forests? Yes. Forest shade grasses grow in damp areas and have wide leaves to help them capture more light. Millions of years ago forest grasses developed a new system of photosynthesis called C4 and became able to survive in hotter and drier open areas. Their modern descendants in the Forest Shade Clade are particularly diverse in Madagascar and reconstructing their evolutionary history will help us understand how the C4 photosynthesis system arose.


Poecilostachys ground cover in montane rainforest of Marojejy National Park

Poecilostachys ground cover in montane rainforest of Marojejy National Park. Many botanists walk through the rainforest looking upwards to search for flowering trees, but there are many interesting things to be found at ground level.

Reconstructing this evolutionary history is part of Russell Hall’s PhD research at the University of Sheffield. Russell planned this trip to collect fresh material for extraction of well preserved DNA. I came along to help identify the species and plan my future work on listing and describing all Madagascar grasses.We were lucky to work with local flora specialists including Franck Rakotonasolo, Mijoro Rakotoarinivo, Hélène Ralimanana, and Tianjanahary Randriamboavonjy from the Kew Madagascar Conservation Centre, Jackie Andriantiana from Parc de Tsimbazaza, and Guillaume Besnard from CNRS Toulouse.


Plant collecting in the dark

Guillaume is placing specimens into orange desiccating silica gel to preserve the DNA while I am writing up collection notes. In the absence of a table in the wet forest the Kew landrover is very convenient!

Nobody has ever gone searching for forest shade grasses in Madagascar before, and we were anxious about not finding the right plants. We need not have worried: as soon as we entered the wet rainforest we could see nothing but a carpet of Poecilostachys, with broad leaves and long thin inflorescences. As we walked across elevation belts up the Marojejy mountain the shape of the inflorescences changed, and the length of the awns changed, and the leaves became more hairy. So now we have over 30 different collections of Poecilostachys, all similar but with myriads of subtle differences – identification will not be easy!


Dense patch of flowering Oplismenus in a sunny spot in Marojejy National Park

Dense patch of flowering Oplismenus in a sunny spot in Marojejy National Park. The long thin awns stick to passing animals enabling dispersal.

Oplismenus is the only known grass genus with awns that produce a sticky secretion (awns are the long thread-like structures protruding from grass spikelets). How do the awns produce a secretion? And what is the dispersal mechanism? Nobody seems to know and nobody has ever researched this.

The next best thing after wet rainforest were the rice fields that have not been weeded. Damp areas at the bottoms of valleys and around streams have been converted into rice paddy fields throughout Madagascar, and as our car went around the bends in the road we had to keep our eyes peeled for untidy rice paddies with weeds. When the earth barriers separating the individual rice paddies are built or repaired Alloteropsis seeds in the soil germinate: the young Alloteropsis seedlings love water and are visually almost indistinguishable from rice plants. They go on to produce a dark tall panicles where the upper flower in each spikelet grows a long awn.


Plant collecting in the dark

Plant collecting in the dark: Guillaume is using a torch to identify a species of forest Panicum while Russell is pressing Poecilostachys.

After five weeks in the field and 250 grass collections we feel confident that we have advanced the overall state of knowledge of grass diversity in Madagascar as well as finding material for DNA extraction. For future outcomes from this research see the University of Sheffield Evolutionary and Environmental Physiology laboratory website.

The 20th World Orchid Conference is underway in Singapore this week. Lauren Gardiner (Kew) is among the delegates and will be presenting our emonocot Orchidaceae poster, highlighting the main outputs of the emonocot project for this huge family.  http://www.20woc.com.sg/site/

emonocot conference poster, WOC 2011

 

The poster highlights the main outputs planned for the orchid family by emonocot. In addition to taxon pages and identification tools, emonocot also aims to facilitate the work of taxonomists by providing copies of the protologues (original publications of scientific names) that taxonomists need to consult during their research.  These will be made available on emonocot taxon pages for each orchid genus.

Protologue example

Development of an interactive key to orchid genera has now started. Meanwhile, the first phase of testing of a Beta version of the slipper orchid key was completed this summer, by A’ Level biology students at Writhlington School (nr. Radstock, Somerset) and members of the school’s Orchid Project.

 

Paph ID Writhlington_School

Above: Heather (left) and Emily looking for characters on a specimen of Paphiopedilum liemianum from the Writhlington School greenhouses.

phrag_leaf_Writhlington

Above: Ashley (left), Jacob (centre) and Katie (right) inspect Phragmipedium leaves.

As well as being able to make use of the Project’s own slipper orchid collection (curated by pupil Mitchell Williams, aged 15), the pupils worked with life-size high-resolution images of herbarium specimens provided by Kew’s Global Plants Initiative (GPI) team (available online through Kew’s online herbarium catalogue, HerbCat and through JSTOR Plant Science).

Members of the Orchid Project took up rulers and hand lenses to take measurements and observations, and note the characteristics of their specimens for discussion in the class and to key out their plants. Several pupils expressed enthusiasm for the software that we’re using (Lucid v3.5) and an interest in creating their own keys for the groups that they curate.

Ruth would like to thank to Simon Pugh-Jones and the Writhlington School pupils for their contributions and patience with the early draft of this key. Thanks also to pupils Mitchell and Clancy for permission to use their photographs (above).

A first draft of the slipper orchid key can be viewed online here:

http://build.e-monocot.org/test/test_key/cypripediodeae.html

Features (character states) can be selected in the top left-hand panel. Illustrations are not yet available in this online version, and the key needs further testing, so this is very much a work in progress.

Ruth

 


Dioscorea strydomiana in habitat.


One of the few remaining intact plants of Dioscorea strydomiana in habitat.

Paul Wilkin visited South Africa October 5-13 as part of a collaborative project with Dr. Muthama Muasya (UCT) and John & Sandie Burrows (Buffelskloof Herbarium).

 

The visit had two main aims. Firstly, collections were made for UCT geared towards a revised taxonomy and a species-level phylogeny of the predominantly South African perennial-tubered clade of Dioscorea. The visit was also geared towards providing a scientific basis for conservation of  the critically endangered D.strydomiana. The locality of that species was visited with staff of the Mpumalanga Tourism and Parks Agency. It was agreed that a conservation action plan and funding for it is urgently needed to prevent extinction. This charismatic but slow-growing and dioecious yam is known only from ca 200 individuals. The above ground tubers of plant which unusually has this non-twining stems are being heavily harvested for medicinal use.

The remains of a tuber base following heavy harvesting, resuting in exposure of the tuber parenchyma to water and subsequent rotting and plant death.
The remains of a tuber base following heavy harvesting, resuting in exposure of the tuber parenchyma to water and subsequent rotting and plant death
An extensively harvested plant with four new shoots at the tuber margin
An extensively harvested plant with four new shoots at the tuber margin

In addition to the Dioscorea work, the eMonocot workshops in 2012  were also publicised and plants from 16 of the 78 monocot families were seen in just 4 days in the field. They included unusual taxa such as Behnia reticulata (Asparagaceae) and Prionium serratum (Thurniaceae). These two genera are endemic to the region. Other highly attractive monocots encountered included Disa woodii (Orchidaceae), Scadoxus puniceus Watsonia confusa (Iridaceae). These plants highlight the major contribution of South Africa to monocot plant diversity worldwide.

Watsonia confusa, endemic to the Eastern Cape and KwaZulu Natal.
Watsonia confusa, endemic to the Eastern Cape and KwaZulu Natal
Scadoxus puniceus or paintbrush lily.
Scadoxus puniceus or paintbrush lily
Disa woodii, an endemic terrestrial orchid
Disa woodii, an endemic terrestrial orchid.

At the end of September 2011, the Biodiversity Synthesis Center (BioSynC) at the Field Museum in Chicago hosted a synthesis meeting for researchers working on Carex. They were joined by representatives from EOL and eMonocot. The goals of the Carex research group overlap considerably with the vision of eMonocot as explained nicely by Dave Simpson (Kew) during his presentation at the meeting. With previous experience in biodiversity informatics (two LifeDesks, one on the subgenus Vignea and one on the non-Vignea Carex), the Carex research group have become the first active taxonomic user community to take up the eMonocot system.

At the meeting Ed Baker (NHM) gave a talk on the Scratchpad system within the context of ViBRANT. This was followed by some training and the chance for everyone to upload some of their own data into the life site. The Cyperaceae site now has 39 active editors contributing images, taxon descriptions and all sorts of other information and working together on the classification of the largest Cyperaceae genus (Carex). [Note: some of the cyperologists present at the meeting have interests in non-Carex genera also, so watch the space]

Highlights of the meeting for me included: meeting this enthusiastic group of scientists; bouncing ideas back and forth about how to use the e-Monocot Cyperaceae site as a collaborative environment for taxonomic work on Carex; deciding on targets and responsibilities for the work at hand; the wonderful facilities of the Field Museum and food at BioSynC and of course being photographed with Sue the dinosaur (below).

Since the meeting, the taxonomic descriptions of the 106 species covered in the Sedges of the British Isles have been added into the site. This represents about 1/6th of the Cyperaceae species found in Europe.

BioSynC Cyperaceae participants, 28 September 2011.  Standing, L to R: Jane Balaban, John Balaban, Gayle Tonkovich, Bethany Brown, Marlene Hahn, Marcia Waterway, Kyong-Sook Chung, Anton Reznicek, Paul Rothrock, Takuji Hoshino, Andrew Hipp, Elizabeth Zimmerman, Kenneth Dritz, Karen Wilson, Wayt Thomas, David Simpson, Marcial Escudero, Pedro Jimenez, Gerould Wilhelm, Shu-ren Zhang.  Kneeling, L to R: Edward Baker, Bil Alverson, Theodore Cochrane, Jennifer Kluse, Odile Weber, Timothy Jones, Eric Roalson, Modesto Luceno, Kerry Ford, Leo Bruederle, Bruce Ford.

BioSynC Cyperaceae participants, 28 September 2011.

Standing, L to R: Jane Balaban, John Balaban, Gayle Tonkovich, Bethany Brown, Marlene Hahn, Marcia Waterway, Kyong-Sook Chung, Anton Reznicek, Paul Rothrock, Takuji Hoshino, Andrew Hipp, Elizabeth Zimmerman, Kenneth Dritz, Karen Wilson, Wayt Thomas, David Simpson, Marcial Escudero, Pedro Jimenez, Gerould Wilhelm, Shu-ren Zhang.

Kneeling, L to R: Edward Baker, Bil Alverson, Theodore Cochrane, Jennifer Kluse, Odile Weber, Timothy Jones, Berit Gehrke, Eric Roalson, Modesto Luceno, Kerry Ford, Leo Bruederle, Bruce Ford.

During a recent field trip to the Caribbean island of
Montserrat, myself and Marcelo Sellaro discovered plant species which had not
previously been known to occur on the island. I specialise in the Araceae
family (Aroids), while Marcelo looks after the Aroid and Bromeliad collection
in Kew’s Horticulture department. Read more about the beautiful island of
Montserrat and the interesting monocots we found there on the Kew UK Overseas Territories
blog
.Montserrat

Participants of the BioSynC 2011 meeting, The Field Museum, Chicago, 26th to 30th September 2011

Participants of the BioSynC 2011 meeting, The Field Museum, Chicago, 26th to 30th September 2011- Photo credits: BioSynC Carex group

Dave Simpson (4th from right, middle row, Kew), Odile Weber (5th from left, front row, Kew) and Ed Baker (1st on left, front row, NHM) have been in Chicago this week for the BioSynC 2011 meeting, where they're presenting and giving workshops on the eMonocot Cyperaceae scratchpad.

For more news on how the meeting has progressed follow this link: http://systematics.mortonarb.org/carex/index.php/Overview_of_eMonocot_an...

Look out for Odile's blog when she returns to the UK.

As part of Science Uncovered at The Natural History Museum, members of the eMonocot & Scratchpad teams engaged with the public under the theme "Taxonomy 2.0" to discuss their work.

Science Uncovered in the Main Hall of The Natural History Museum, London

Taxonomy 2.0 stand in the bottom right with a surrounding crowd and SatScan (white light) - © Dennis Murphy

The stand included multiple Scratchpad displays, a working SatScan Unit and numerous examples of specimens.

The event was attended by over 5,500 visitors.

Science Uncovered was part of European Researchers' Night.

Scratchpads developed and conceived by: Vince Smith, Simon Rycroft, Dave Roberts, Ben Scott...